ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIR169_2
source: miRBase, original name: sbi-MIR169e (MI0010873)
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGCCAAGGATGACTTGCCGG miRNA* GGCAAGTCATCTGTGGCTACG mismatches: 1 bulges: 0 |
pre-miRNA
GTAGCCAAGGATGACTTGCCGGCATTTCTTGGGTCGGATGACTGAGTTGTTGAGCCTGGGGATGAACAGACCCGGATCGACGGCCGGCCGGCAAGTCATCT
GTGGCTACG
dot-bracket secondary structure
)((((((.(((((((((((((((........((((....))))..((((((((..(((((..(....)..))))).))))))))..)))))))))))))))
.))))))..
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zhang L, Ware D, Unpublished (2009).,
GTAGCCAAGGATGACTTGCCGGCATTTCTTGGGTCGGATGACTGAGTTGTTGAGCCTGGGGATGAACAGACCCGGATCGACGGCCGGCCGGCAAGTCATCT
GTGGCTACG
dot-bracket secondary structure
)((((((.(((((((((((((((........((((....))))..((((((((..(((((..(....)..))))).))))))))..)))))))))))))))
.))))))..
SIMILARITIES| miRBase ptc-MIR169g: 9.0E-8 PMRD ptc-miR169g: 9.0E-8 microPC miR169: 1.0E-6 | UniProt no hits RFAM 2MIR169_2: 4.0E-56 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zhang L, Ware D, Unpublished (2009).,
