ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIR169
source: miRBase, original name: sbi-MIR169f (MI0001560)
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGCCAAGGATGACTTGCCTG miRNA* GGCAGTCTCCTTGGCTAGCC mismatches: 0 bulges: 3 |
pre-miRNA
CGATGAGAGCACTGCTCTGGTAGCCAAGGATGACTTGCCTGTGGCCTCCACTCCACCTGCGGCAGGAGGCTCTTCTTCTGCGCGCGCGTGTGTGTGTGGT
TGTCGATCGCAGGCAGTCTCCTTGGCTAGCCTCAGCGGCTCTCATCCT
dot-bracket secondary structure
.(((((((((...(((..((((((((((((.((((.(((((((..(.((((.(((((((((((((((((....)))))))).)))).).))).).)))).
....)..)))))))))))))))))))).)))..))).)))))))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
CGATGAGAGCACTGCTCTGGTAGCCAAGGATGACTTGCCTGTGGCCTCCACTCCACCTGCGGCAGGAGGCTCTTCTTCTGCGCGCGCGTGTGTGTGTGGT
TGTCGATCGCAGGCAGTCTCCTTGGCTAGCCTCAGCGGCTCTCATCCT
dot-bracket secondary structure
.(((((((((...(((..((((((((((((.((((.(((((((..(.((((.(((((((((((((((((....)))))))).)))).).))).).)))).
....)..)))))))))))))))))))).)))..))).)))))))))..
SIMILARITIES| miRBase zma-MIR169k: 6e-22 PMRD sbi-miR169f: 2e-80 microPC miR169: 1e-56 | UniProt no hits RFAM MIR169_5: 3e-79 |
Identical with: miR169 from microPC (MNEST044994) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
