ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIR169
source: miRBase, original name: sbi-MIR169g (MI0001561)
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGCCAAGGATGACTTGCCTG miRNA* GGCAGTCTCCTTGGCTAGTC mismatches: 0 bulges: 3 |
pre-miRNA
GCGATAAGAGTCTGCCCAGATAGCCAAGGATGACTTGCCTGTGGCCTCTTGGCTTGGCTTGAGAGCTTATTAACTCTGTGCACGTTTAATTTGCTCTTCT
TGTGGCCTCGATCACAGGCAGTCTCCTTGGCTAGTCCGGGCGGCTCTTATCT
dot-bracket secondary structure
..((((((((.((((((.((((((((((((.((((.((((((((((....)))..((((.((((((..(((((...((....)).)))))..))))))..
...)))).....)))))))))))))))))))).))).)))))))))))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
GCGATAAGAGTCTGCCCAGATAGCCAAGGATGACTTGCCTGTGGCCTCTTGGCTTGGCTTGAGAGCTTATTAACTCTGTGCACGTTTAATTTGCTCTTCT
TGTGGCCTCGATCACAGGCAGTCTCCTTGGCTAGTCCGGGCGGCTCTTATCT
dot-bracket secondary structure
..((((((((.((((((.((((((((((((.((((.((((((((((....)))..((((.((((((..(((((...((....)).)))))..))))))..
...)))).....)))))))))))))))))))).))).)))))))))))))).
SIMILARITIES| miRBase zma-MIR169j: 1e-29 PMRD sbi-miR169g: 8e-83 microPC miR169: 0.0000000000001 | UniProt no hits RFAM MIR169_5: 6e-81 |
Identical with: sbi-miR169g from PMRD (MNEST054443) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
