ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIR169
source: miRBase, original name: sbi-MIR169h (MI0010874)
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGCCAAGGATGACTTGCCTA miRNA* GGCATGTCTTCCTTGGCTACT mismatches: 2 bulges: 0 |
pre-miRNA
TAGCCAAGGATGACTTGCCTAGCTATATGCCTGAGAGCCTGTCTCTTGGTGGTAAATTTGTATGTGCTGAGCATATAGGCATGTCTTCCTTGGCTACT
dot-bracket secondary structure
((((((((((.(((.((((((......((((.(((((.....)))))...))))........(((((...))))))))))).))).))))))))))..
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare, Nature. 457:551-556(2009)., "The Sorghum bicolor genome and the diversification of grasses"
TAGCCAAGGATGACTTGCCTAGCTATATGCCTGAGAGCCTGTCTCTTGGTGGTAAATTTGTATGTGCTGAGCATATAGGCATGTCTTCCTTGGCTACT
dot-bracket secondary structure
((((((((((.(((.((((((......((((.(((((.....)))))...))))........(((((...))))))))))).))).))))))))))..
SIMILARITIES| miRBase zma-MIR169f: 0.000001 PMRD zma-miR169f: 0.000001 microPC miR169: 0.00007 | UniProt no hits RFAM MIR169_5: 1e-49 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare, Nature. 457:551-556(2009)., "The Sorghum bicolor genome and the diversification of grasses"
