ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIR169
source: miRBase, original name: sbi-MIR169o (MI0013253)
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGCCAAGGATGATTTGCCTG miRNA* GGCAAATCATCTGGGCTAG mismatches: 1 bulges: 1 |
pre-miRNA
ATAGCCAAGGATGATTTGCCTGTAGCAACCTCTGAGTGCTCCTGCTGCCATGGCAGTCAGGAGCGCCAAGTGGGTGCTTCTCCGGGCAAATCATCTGGGC
TAG
dot-bracket secondary structure
.(((((..((((((((((((((.((((.((.((..(((((((((((((....)))).)))))))))..)).)).))))....)))))))))))))).)))
)).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"
ATAGCCAAGGATGATTTGCCTGTAGCAACCTCTGAGTGCTCCTGCTGCCATGGCAGTCAGGAGCGCCAAGTGGGTGCTTCTCCGGGCAAATCATCTGGGC
TAG
dot-bracket secondary structure
.(((((..((((((((((((((.((((.((.((..(((((((((((((....)))).)))))))))..)).)).))))....)))))))))))))).)))
)).
SIMILARITIES| miRBase osa-MIR1433: 0.00000008 PMRD osa-miR1433: 0.00000008 microPC miR169: 0.00002 | UniProt no hits RFAM MIR169_5: 2e-52 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"
