ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIR171
source: miRBase, original name: sbi-MIR171a (MI0001566)
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGATTGAGCCGTGCCAATATC miRNA* TGTTGGCATGGTTCAATCAAA mismatches: 0 bulges: 0 |
pre-miRNA
TTTGGTTGGCTGAGAGAGTGCGATGTTGGCATGGTTCAATCAAATCATCGCCCGGCAAGGTGACTTAAATTTTGCGCTTTCGATCGATCGAGGTGCAGGGA
GGTGTTTCCAGGCACCGTGTTTGATTGAGCCGTGCCAATATCACAACCTTCTCTAGCCTAT
dot-bracket secondary structure
)......(((((((((..((.((((((((((((((((((((((((.....(((...(((....)))......(((((((.(((....))))))))))))).
((((((....))))))..)))))))))))))))))))))))).))...))))).))))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
TTTGGTTGGCTGAGAGAGTGCGATGTTGGCATGGTTCAATCAAATCATCGCCCGGCAAGGTGACTTAAATTTTGCGCTTTCGATCGATCGAGGTGCAGGGA
GGTGTTTCCAGGCACCGTGTTTGATTGAGCCGTGCCAATATCACAACCTTCTCTAGCCTAT
dot-bracket secondary structure
)......(((((((((..((.((((((((((((((((((((((((.....(((...(((....)))......(((((((.(((....))))))))))))).
((((((....))))))..)))))))))))))))))))))))).))...))))).))))...
SIMILARITIES| miRBase zma-MIR171f: 1.0E-16 PMRD sbi-miR171a: 4.0E-88 microPC miR171: 3.0E-8 | UniProt no hits RFAM 1MIR171_1: 9.0E-77 |
Identical with: sbi-miR171a from PMRD (MNEST054452) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
