ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIR171
source: miRBase, original name: sbi-MIR171a (MI0001566)
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGATTGAGCCGTGCCAATATC miRNA* TGTTGGCATGGTTCAATCAAA mismatches: 0 bulges: 0 |
pre-miRNA
TTGGTTGGCTGAGAGAGTGCGATGTTGGCATGGTTCAATCAAATCATCGCCCGGCAAGGTGACTTAAATTTTGCGCTTTCGATCGATCGAGGTGCAGGGA
GGTGTTTCCAGGCACCGTGTTTGATTGAGCCGTGCCAATATCACAACCTTCTCTAGCCTAT
dot-bracket secondary structure
......(((((((((..((.((((((((((((((((((((((((.....(((...(((....)))......(((((((.(((....))))))))))))).
((((((....))))))..)))))))))))))))))))))))).))...))))).))))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
TTGGTTGGCTGAGAGAGTGCGATGTTGGCATGGTTCAATCAAATCATCGCCCGGCAAGGTGACTTAAATTTTGCGCTTTCGATCGATCGAGGTGCAGGGA
GGTGTTTCCAGGCACCGTGTTTGATTGAGCCGTGCCAATATCACAACCTTCTCTAGCCTAT
dot-bracket secondary structure
......(((((((((..((.((((((((((((((((((((((((.....(((...(((....)))......(((((((.(((....))))))))))))).
((((((....))))))..)))))))))))))))))))))))).))...))))).))))...
SIMILARITIES| miRBase zma-MIR171f: 1e-16 PMRD sbi-miR171a: 4e-88 microPC miR171: 0.00000003 | UniProt no hits RFAM MIR171_1: 9e-77 |
Identical with: sbi-miR171a from PMRD (MNEST054452) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
