ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIR171
source: miRBase, original name: sbi-MIR171d (MI0001565)
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGATTGAGCCGTGCCAATATC miRNA* TGTTGGCTCGGCTCACTCAGA mismatches: 2 bulges: 0 |
pre-miRNA
ATAATGGAATAGTAGCTATGATGTTGGCTCGGCTCACTCAGACCACCTCTCCGATCCTCAGCTCGTGTCCATTGCGACATCGATCATGTATATATGTCGC
TGGTCGTGGTTTCTGATTGAGCCGTGCCAATATCTCAGTACTCTTCCATATAT
dot-bracket secondary structure
...((((((.((((.((..(((((((((.(((((((.(((((((((.....(((........)))...(((..(((((((.............)))))))
)))..))))..))))).))))))).)))))))))..)))))).))))))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
ATAATGGAATAGTAGCTATGATGTTGGCTCGGCTCACTCAGACCACCTCTCCGATCCTCAGCTCGTGTCCATTGCGACATCGATCATGTATATATGTCGC
TGGTCGTGGTTTCTGATTGAGCCGTGCCAATATCTCAGTACTCTTCCATATAT
dot-bracket secondary structure
...((((((.((((.((..(((((((((.(((((((.(((((((((.....(((........)))...(((..(((((((.............)))))))
)))..))))..))))).))))))).)))))))))..)))))).))))))....
SIMILARITIES| miRBase zma-MIR171e: 1e-16 PMRD sbi-miR171d: 2e-83 microPC miR171: 0.00000003 | UniProt no hits RFAM MIR171_1: 1e-72 |
Identical with: sbi-miR171d from PMRD (MNEST054455) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
