ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIR171
source: miRBase, original name: sbi-MIR171e (MI0001570)
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTGAGCCGAACCAATATCACT miRNA* GTGGTATTGTTTCGGCTCATGT mismatches: 1 bulges: 1 |
pre-miRNA
AGGAGGAAGAAGACGACATGGCGTGGTATTGTTTCGGCTCATGTCCTTCTTGCTTCGAGTCTGTCGTCGGATTTTGGATGTGATGTGAGCCGAACCAATA
TCACTCATGTATTCTTCATTCTGA
dot-bracket secondary structure
((((.((((((....((((((.(((((((((.((((((((((((((.(((......(((((((....))))))).))).).))))))))))))).)))))
)))))))))).)))))).))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
AGGAGGAAGAAGACGACATGGCGTGGTATTGTTTCGGCTCATGTCCTTCTTGCTTCGAGTCTGTCGTCGGATTTTGGATGTGATGTGAGCCGAACCAATA
TCACTCATGTATTCTTCATTCTGA
dot-bracket secondary structure
((((.((((((....((((((.(((((((((.((((((((((((((.(((......(((((((....))))))).))).).))))))))))))).)))))
)))))))))).)))))).))))..
SIMILARITIES| miRBase zma-MIR171h: 4e-38 PMRD sbi-miR171e: 3e-66 microPC miR171: 0.0000004 | UniProt no hits RFAM MIR171_2: 3e-60 |
Identical with: sbi-miR171e from PMRD (MNEST054456) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
