ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIR172
source: miRBase, original name: sbi-MIR172d (MI0010885)
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGAATCTTGATGATGCTGCA miRNA* TGGCATCATCAAGATTCACA mismatches: 4 bulges: 0 |
pre-miRNA
TGGCATCATCAAGATTCACAACCCATGGATCCAAATAAACCACTGATTTGGATCGAGGAGATGCATGAGAATCTTGATGATGCTGCAT
dot-bracket secondary structure
.((((((((((((((((.((.(((.(.(((((((((.........))))))))).))).).....)).))))))))))))))))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare, Nature. 457:551-556(2009)., "The Sorghum bicolor genome and the diversification of grasses"
TGGCATCATCAAGATTCACAACCCATGGATCCAAATAAACCACTGATTTGGATCGAGGAGATGCATGAGAATCTTGATGATGCTGCAT
dot-bracket secondary structure
.((((((((((((((((.((.(((.(.(((((((((.........))))))))).))).).....)).))))))))))))))))....
SIMILARITIES| miRBase zma-MIR172a: 0.000000004 PMRD zma-miR172a: 0.000000004 microPC miR172: 0.000001 | UniProt no hits RFAM mir-172: 1e-43 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare, Nature. 457:551-556(2009)., "The Sorghum bicolor genome and the diversification of grasses"
