ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIR319
source: miRBase, original name: sbi-MIR319 (MI0001573)
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGGACTGAAGGGTGCTCCC miRNA* AGAGCGTCCTTCAGTCCACTC mismatches: 4 bulges: 1 |
pre-miRNA
CTGCCGCCATGGTTGTGATATGGCCGGATGGAAGAGAGCGTCCTTCAGTCCACTCAGGGGCGGTGCTAGGGTCGAATTAGCTGCCGACTCATTCACCCAC
ATGCCAAGCAAACGGCCATGGAAACGAGCTAGCTTTGCAGATGAGTGAATGAAGCGGGAGGTAAAAGCTTCGATCTCGCACCATCTTTGCTTGGACTGAA
GGGTGCTCCCTCCTCCCCTCCTTAATTGTTTACTTTACCCATGGCGCAG
dot-bracket secondary structure
((((.(((((((..((((...((..(((.(((.(.((((..(((((((((((..(((((..(((((..(((((((((((.((.(((..((((((((.((.
.(((.((((....(((..((....)).))).)))).)))..)).))))))))..))).)).)))....)))))))).)))))..)))))..)))))))))
))..))))).))))))...))........)))).....)))))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
CTGCCGCCATGGTTGTGATATGGCCGGATGGAAGAGAGCGTCCTTCAGTCCACTCAGGGGCGGTGCTAGGGTCGAATTAGCTGCCGACTCATTCACCCAC
ATGCCAAGCAAACGGCCATGGAAACGAGCTAGCTTTGCAGATGAGTGAATGAAGCGGGAGGTAAAAGCTTCGATCTCGCACCATCTTTGCTTGGACTGAA
GGGTGCTCCCTCCTCCCCTCCTTAATTGTTTACTTTACCCATGGCGCAG
dot-bracket secondary structure
((((.(((((((..((((...((..(((.(((.(.((((..(((((((((((..(((((..(((((..(((((((((((.((.(((..((((((((.((.
.(((.((((....(((..((....)).))).)))).)))..)).))))))))..))).)).)))....)))))))).)))))..)))))..)))))))))
))..))))).))))))...))........)))).....)))))))))))
SIMILARITIES| miRBase zma-MIR319b: 1e-92 PMRD sbi-miR319: 2e-140 microPC miR319: 2e-41 | UniProt no hits RFAM MIR159: 2e-109 |
Identical with: sbi-miR319 from PMRD (MNEST054468) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
