ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIR394
source: miRBase, original name: sbi-MIR394b (MI0010889)
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGGCATTCTGTCCACCTCC miRNA* AGGTGGGCATACTGCCAATG mismatches: 2 bulges: 0 |
pre-miRNA
CTTGGCATTCTGTCCACCTCCTTGCCGATCGATCTTGCAGAAAGTTTTTTTTTGGAGGTGGGCATACTGCCAATGGA
dot-bracket secondary structure
.((((((.(.(((((((((((............(((.....))).........))))))))))).).))))))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare, Nature. 457:551-556(2009)., "The Sorghum bicolor genome and the diversification of grasses"
CTTGGCATTCTGTCCACCTCCTTGCCGATCGATCTTGCAGAAAGTTTTTTTTTGGAGGTGGGCATACTGCCAATGGA
dot-bracket secondary structure
.((((((.(.(((((((((((............(((.....))).........))))))))))).).))))))....
SIMILARITIES| miRBase sbi-MIR394a: 0.00000001 PMRD sbi-miR394a: 0.00000001 microPC miR394: 0.0002 | UniProt no hits RFAM MIR394: 5e-21 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare, Nature. 457:551-556(2009)., "The Sorghum bicolor genome and the diversification of grasses"
