ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIR395
source: miRBase, original name: sbi-MIR395b (MI0001533)
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTGAAGTGTTTGGGGGAACTC miRNA* GTTCTCTGCAAGCACTTCACGA mismatches: 0 bulges: 1 |
pre-miRNA
GTTAGGTTTGGTGTCCCTAGGAGTTCTCTGCAAGCACTTCACGAGGCATCGTTTTGAGAGCTTTTGTGAAGTGTTTGGGGGAACTCTTAGTGTCACAAAT
CATTT
dot-bracket secondary structure
....((((((.((.(.(((((((((((((.(((((((((((((((((.((.......)))).)))))))))))))))))))))))))))).).)))))))
)....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
GTTAGGTTTGGTGTCCCTAGGAGTTCTCTGCAAGCACTTCACGAGGCATCGTTTTGAGAGCTTTTGTGAAGTGTTTGGGGGAACTCTTAGTGTCACAAAT
CATTT
dot-bracket secondary structure
....((((((.((.(.(((((((((((((.(((((((((((((((((.((.......)))).)))))))))))))))))))))))))))).).)))))))
)....
SIMILARITIES| miRBase sbi-MIR395e: 3e-32 PMRD sbi-miR395b: 6e-55 microPC miR395: 0.000000001 | UniProt no hits RFAM mir-395: 2e-42 |
Identical with: sbi-miR395b from PMRD (MNEST054474) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
