ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIR399
source: miRBase, original name: sbi-MIR399b (MI0001546)
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCAAAGGAGAGCTGCCCTG miRNA* GTGCAGCTCTCCTCTGGCATG mismatches: 2 bulges: 0 |
pre-miRNA
TAGCTCAGGGTGAGAATCACAGTGCAGCTCTCCTCTGGCATGAAGGCTGAGAGAGTCATGAGCAGTTTTCTGGCCTTTCCCTGCCAAAGGAGAGCTGCCC
TGCCATTCATTAGCCCTGCAA
dot-bracket secondary structure
.....((((((..((((..(((.(((((((((((.(((((.(((((((.((((((.(.......))))))))))))))...))))).))))))))))).)
))..))))....))))))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
TAGCTCAGGGTGAGAATCACAGTGCAGCTCTCCTCTGGCATGAAGGCTGAGAGAGTCATGAGCAGTTTTCTGGCCTTTCCCTGCCAAAGGAGAGCTGCCC
TGCCATTCATTAGCCCTGCAA
dot-bracket secondary structure
.....((((((..((((..(((.(((((((((((.(((((.(((((((.((((((.(.......))))))))))))))...))))).))))))))))).)
))..))))....))))))...
SIMILARITIES| miRBase zma-MIR399b: 4e-38 PMRD sbi-miR399b: 1e-53 microPC miR399: 0.00009 | UniProt no hits RFAM mir-399: 2e-52 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
