ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIR399
source: miRBase, original name: sbi-MIR399k (MI0013258)
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCAAAGGGGATTTGCCCGG miRNA* GGGCAACCCTCCATTGGCAGG mismatches: 5 bulges: 0 |
pre-miRNA
AGGGCAACCCTCCATTGGCAGGTGCGACCTACACCCTACCCTGCCAAAGGGGATTTGCCCGGC
dot-bracket secondary structure
.((((((..((((.((((((((((.(........).)).)))))))).))))..))))))...
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"
AGGGCAACCCTCCATTGGCAGGTGCGACCTACACCCTACCCTGCCAAAGGGGATTTGCCCGGC
dot-bracket secondary structure
.((((((..((((.((((((((((.(........).)).)))))))).))))..))))))...
SIMILARITIES| miRBase zma-MIR399g: 0.0000000002 PMRD vvi-miR399e: 0.0007 microPC no hits | UniProt no hits RFAM mir-399: 1e-24 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"
