ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIR437
source: miRBase, original name: sbi-MIR437a (MI0010902)
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAAGTTAGAGAAGTTTGACTT miRNA* GTCAAACTTCTCTATGTTTTAA mismatches: 2 bulges: 1 |
pre-miRNA
AAGTCAAACTTCTCTATGTTTTAACTAAGTTTATAGAAATATATAACAACATCTAGAATACCACCAAGTTTACAGAAATATATATAATGACATCTAGAAT
ACAAGCAAGTGCACTCTCAAGATATTAATTTGGTGTTTAATGTTGGCACCTTTTTATAGATTTAGTCAAAGTTAGAGAAGTTTGACTTAG
dot-bracket secondary structure
((((((((((((((((...(((.((((((((((((((((.......((((((...((((((((....((((....))))........(((.((((.((..
....((....))....)).)))).)))...)))))))).)))))).....)))))))))))))))).)))..))))))))))))))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zhang L, Ware D, Unpublished (2009).,
AAGTCAAACTTCTCTATGTTTTAACTAAGTTTATAGAAATATATAACAACATCTAGAATACCACCAAGTTTACAGAAATATATATAATGACATCTAGAAT
ACAAGCAAGTGCACTCTCAAGATATTAATTTGGTGTTTAATGTTGGCACCTTTTTATAGATTTAGTCAAAGTTAGAGAAGTTTGACTTAG
dot-bracket secondary structure
((((((((((((((((...(((.((((((((((((((((.......((((((...((((((((....((((....))))........(((.((((.((..
....((....))....)).)))).)))...)))))))).)))))).....)))))))))))))))).)))..))))))))))))))))..
SIMILARITIES| miRBase sbi-MIR437o: 0.000000003 PMRD sbi-miR437o: 0.000000003 microPC miR437: 0.00001 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zhang L, Ware D, Unpublished (2009).,
