ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIR528
source: miRBase, original name: sbi-MIR528 (MI0013259)
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGAAGGGGCATGCAGAGGAG miRNA* CCTGTGCCTGCCTCTTCCATT mismatches: 2 bulges: 0 |
pre-miRNA
TGGAAGGGGCATGCAGAGGAGCACGAGGCTTGGCTGGAAGCCGACCTACGCCTCGCTGGCTCTCCTGTGCCTGCCTCTTCCATT
dot-bracket secondary structure
(((((((((((.(((.((((((((((((((((((.....))))).....)))))).))...))))).))).)))))))))))..
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"
TGGAAGGGGCATGCAGAGGAGCACGAGGCTTGGCTGGAAGCCGACCTACGCCTCGCTGGCTCTCCTGTGCCTGCCTCTTCCATT
dot-bracket secondary structure
(((((((((((.(((.((((((((((((((((((.....))))).....)))))).))...))))).))).)))))))))))..
SIMILARITIES| miRBase ssp-MIR528: 3e-19 PMRD osa-miR528: 0.000004 microPC miR528: 6e-39 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"
