ABOUT THIS RECORDspecies: Triticum aestivum
miRNA family: MIR156
source: miRBase, original name: tae-MIR156 (MI0016450)
Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAGAAGAGAGTGAGCACA miRNA* TGCTCACCCTCTCTCTGTCAGC mismatches: 2 bulges: 1 |
pre-miRNA
TCCTCTCTCTCTCTCTCTCTGCGTGTCGACCGTCTGCTGTGTCCGATGGGATCGGTCGGGGGCTGCGGTGGAGGGTTGATGATGGTGCGAATGGCTGACA
GAAGAGAGTGAGCACACAGCGGCAGACTACGTCTGGTAAAGAGGACGGATGGATGCGAAGAGAGATATAGACGCAGCTGCTGTTGCGTGCTCACCCTCTC
TCTGTCAGCGTTCCGCCATCAATCAATCTATCCATCCATCTCCCCTTGCCGTTCCCATCGCTTCGCAGCTCGACTGCC
dot-bracket secondary structure
....................(((.(((((......((((((..((((((((.((((.(((((.((.(((((((((((((((((((((.(((((.((((((
((((((.((((((((.(((((((((.((.((((((..........((........))..........)))))).))))))))))).)))))))).)))).
)))))))))))))))))))).)))))))).))))))))...))))).)))).))))))))...)))))))))))))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
references
[1] Dryanova A, Zakharov A, Gulick PJ, Genome. 51:433-443(2008)., "Data mining for miRNAs and their targets in the Triticeae"
TCCTCTCTCTCTCTCTCTCTGCGTGTCGACCGTCTGCTGTGTCCGATGGGATCGGTCGGGGGCTGCGGTGGAGGGTTGATGATGGTGCGAATGGCTGACA
GAAGAGAGTGAGCACACAGCGGCAGACTACGTCTGGTAAAGAGGACGGATGGATGCGAAGAGAGATATAGACGCAGCTGCTGTTGCGTGCTCACCCTCTC
TCTGTCAGCGTTCCGCCATCAATCAATCTATCCATCCATCTCCCCTTGCCGTTCCCATCGCTTCGCAGCTCGACTGCC
dot-bracket secondary structure
....................(((.(((((......((((((..((((((((.((((.(((((.((.(((((((((((((((((((((.(((((.((((((
((((((.((((((((.(((((((((.((.((((((..........((........))..........)))))).))))))))))).)))))))).)))).
)))))))))))))))))))).)))))))).))))))))...))))).)))).))))))))...)))))))))))))).
SIMILARITIES| miRBase hvu-MIR156: 0.000000000000004 PMRD hvv-miR156a: 2e-23 microPC miR156: 0.0000009 | UniProt no hits RFAM mir-156: 0.0000003 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
references
[1] Dryanova A, Zakharov A, Gulick PJ, Genome. 51:433-443(2008)., "Data mining for miRNAs and their targets in the Triticeae"
