ABOUT THIS RECORDspecies: Triticum aestivum
miRNA family: MIR159
source: miRBase, original name: tae-MIR159a (MI0006170)
Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTGGATTGAAGGGAGCTCTG miRNA* GAGCTCCTATCATTCCAATGA mismatches: 5 bulges: 0 |
pre-miRNA
GTGGAGCTCCTATCATTCCAATGAAGGGTCTACCGGAAGGGTTTGTGCAGCTGCTCGTTCATGGTTCCCACTATCCTATCTCCATAGAAAACGAGGAGAG
AGGCCTGTGGTTTGCATGACCGAGGAGCCGCTTCGATCCCTCGCTGACCGCTGTTTGGATTGAAGGGAGCTCTGCAT
dot-bracket secondary structure
(..((((((((.(((.(((((...((((((...((..((((.(((.((.(((.((((.(((((....((((...(((.(((((...........))))).
)))...))))....))))).)))).))).))..))).))))))..)))).))..))))).))).))))))))..)..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: cloned
references
[1] Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q, Genome Biol. 8:R96(2007)., "Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)"
GTGGAGCTCCTATCATTCCAATGAAGGGTCTACCGGAAGGGTTTGTGCAGCTGCTCGTTCATGGTTCCCACTATCCTATCTCCATAGAAAACGAGGAGAG
AGGCCTGTGGTTTGCATGACCGAGGAGCCGCTTCGATCCCTCGCTGACCGCTGTTTGGATTGAAGGGAGCTCTGCAT
dot-bracket secondary structure
(..((((((((.(((.(((((...((((((...((..((((.(((.((.(((.((((.(((((....((((...(((.(((((...........))))).
)))...))))....))))).)))).))).))..))).))))))..)))).))..))))).))).))))))))..)..
SIMILARITIES| miRBase hvu-MIR159a: 6e-81 PMRD tae-miR159a: 1e-97 microPC miR319: 2e-34 | UniProt no hits RFAM MIR159: 2e-19 |
Identical with: tae-miR159a from PMRD (MNEST054673) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: cloned
references
[1] Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q, Genome Biol. 8:R96(2007)., "Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)"
