ABOUT THIS RECORDspecies: Triticum aestivum
miRNA family: MIR159
source: miRBase, original name: tae-MIR159b (MI0006171)
Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTGGATTGAAGGGAGCTCTG miRNA* GAGCTCCTTTCGGTCCAAAAAGG mismatches: 2 bulges: 2 |
pre-miRNA
GAGCTCCTTTCGGTCCAAAAAGGGGTGTTGCTGTGGGTCGATTGAGCTGCTGGGTCATGGATCCCGTTAGCCTACTCCATGTTCATCATTCAGCTCGAGA
TCTGAAAGAAACTACTCCAATTTATACTAATAGTATGTGTGTAGATAGGAAAATGATGGAGTACTCGTTGTTGGGATAGGCTTATGGCTTGCATGCCCCA
GGAGCTGCATCAACCCTACATGGACCCTCTTTGGATTGAAGGGAGCTCTGCATCT
dot-bracket secondary structure
((((((((((((((((((..(((((.(((..(((((((.(((..((((.(((((.((((.(..((((.((((((..(((..((((((((((((.......
.))))..........(((.((((((((...........)))))))).)))..))))))))..((.....)))))..)))))).))))..).)))).))))
).))))..))).)))).)))..)))))))))))))))))))))))))).......
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: cloned
references
[1] Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q, Genome Biol. 8:R96(2007)., "Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)"
GAGCTCCTTTCGGTCCAAAAAGGGGTGTTGCTGTGGGTCGATTGAGCTGCTGGGTCATGGATCCCGTTAGCCTACTCCATGTTCATCATTCAGCTCGAGA
TCTGAAAGAAACTACTCCAATTTATACTAATAGTATGTGTGTAGATAGGAAAATGATGGAGTACTCGTTGTTGGGATAGGCTTATGGCTTGCATGCCCCA
GGAGCTGCATCAACCCTACATGGACCCTCTTTGGATTGAAGGGAGCTCTGCATCT
dot-bracket secondary structure
((((((((((((((((((..(((((.(((..(((((((.(((..((((.(((((.((((.(..((((.((((((..(((..((((((((((((.......
.))))..........(((.((((((((...........)))))))).)))..))))))))..((.....)))))..)))))).))))..).)))).))))
).))))..))).)))).)))..)))))))))))))))))))))))))).......
SIMILARITIES| miRBase osa-MIR159a: 5e-144 PMRD tae-miR159b: 5e-144 microPC miR319: 0.000003 | UniProt no hits RFAM MIR159: 9e-143 |
Identical with: osa-miR159a from PMRD (MNEST048819) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: cloned
references
[1] Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q, Genome Biol. 8:R96(2007)., "Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)"
