ABOUT THIS RECORDspecies: Triticum aestivum
miRNA family: MIR160
source: miRBase, original name: tae-MIR160 (MI0006172)
Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCTGGCTCCCTGTATGCCA miRNA* GCGTGCGAGGAGCCAAGCATG mismatches: 2 bulges: 0 |
pre-miRNA
AGAGGTGAAAACAATGGGATATGCCTGGCTCCCTGTATGCCACTCGCGTAGCTGCCAACTCCCCAAACCTTGCGTTGGCTCTACCGCGGATGGCGTGCGA
GGAGCCAAGCATGACCGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
dot-bracket secondary structure
(((((.((.....((((..(((((.(((((((.(((((((((..(((((((..((((((..............)))))).))).))))..))))))))).
))))))).))))).)))).....)))))))..................
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q, Genome Biol. 8:R96(2007)., "Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)"
AGAGGTGAAAACAATGGGATATGCCTGGCTCCCTGTATGCCACTCGCGTAGCTGCCAACTCCCCAAACCTTGCGTTGGCTCTACCGCGGATGGCGTGCGA
GGAGCCAAGCATGACCGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
dot-bracket secondary structure
(((((.((.....((((..(((((.(((((((.(((((((((..(((((((..((((((..............)))))).))).))))..))))))))).
))))))).))))).)))).....)))))))..................
SIMILARITIES| miRBase bdi-MIR160a: 9e-21 PMRD tae-miR160: 6e-62 microPC miR160: 8e-46 | UniProt no hits RFAM mir-160: 0.00000000000001 |
Identical with: miR160 from microPC (MNEST045601) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q, Genome Biol. 8:R96(2007)., "Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)"
