ABOUT THIS RECORDspecies: Triticum aestivum
miRNA family: MIR164
source: miRBase, original name: tae-MIR164 (MI0006173)
Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGAGAAGCAGGGCACGTGCA miRNA* CATGTGCCTTTCTTCTCCACC mismatches: 1 bulges: 0 |
pre-miRNA
GGTGGAGAAGCAGGGCACGTGCATCCATTTCCAGCTCGGCATTCCCGGCGTCCGGCCGGCCGGCTGCCGCGGCCTTGCCTGGCTGGGTAGTGCGTCGCTC
GATCCGGCCGTGCGCCGGCGGCCGGCCCTTGCATGCATGTGCCTTTCTTCTCCACC
dot-bracket secondary structure
((((((((((.(((((((((((((.((......((.((((....((((((..(((((((...((((((.(((((......)))))))))))..(((....
))))))))))..))))))..))))))...)).))))))))))))).))))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q, Genome Biol. 8:R96(2007)., "Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)"
GGTGGAGAAGCAGGGCACGTGCATCCATTTCCAGCTCGGCATTCCCGGCGTCCGGCCGGCCGGCTGCCGCGGCCTTGCCTGGCTGGGTAGTGCGTCGCTC
GATCCGGCCGTGCGCCGGCGGCCGGCCCTTGCATGCATGTGCCTTTCTTCTCCACC
dot-bracket secondary structure
((((((((((.(((((((((((((.((......((.((((....((((((..(((((((...((((((.(((((......)))))))))))..(((....
))))))))))..))))))..))))))...)).))))))))))))).))))))))))
SIMILARITIES| miRBase zma-MIR164c: 0.000002 PMRD tae-miR164b: 8e-83 microPC miR164: 8e-83 | UniProt no hits RFAM MIR164: 0.0000006 |
Identical with: miR164 from microPC (MNEST045052) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q, Genome Biol. 8:R96(2007)., "Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)"
