ABOUT THIS RECORDspecies: Triticum aestivum
miRNA family: MIR167
source: miRBase, original name: tae-MIR167 (MI0006174)
Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGCTGCCAGCATGATCTA miRNA* GATCAAACAAGAAACGCTGCGGCAGCCTCACT mismatches: 3 bulges: 13 |
pre-miRNA
CTGCCCAAGGGAACGAGTGAAGCTGCCAGCATGATCTAGCTCCGAGTGATCAAACAAGAAACGCTGCGGCAGCCTCACTTCTTCCCGCCGTTGGGCACAA
CTACTTCT
dot-bracket secondary structure
.((((((((((((.((((((.((((((.((((((((...........)))))............))))))))).)))))).)))))....)))))))...
........
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: cloned
references
[1] Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q, Genome Biol. 8:R96(2007)., "Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)"
CTGCCCAAGGGAACGAGTGAAGCTGCCAGCATGATCTAGCTCCGAGTGATCAAACAAGAAACGCTGCGGCAGCCTCACTTCTTCCCGCCGTTGGGCACAA
CTACTTCT
dot-bracket secondary structure
.((((((((((((.((((((.((((((.((((((((...........)))))............))))))))).)))))).)))))....)))))))...
........
SIMILARITIES| miRBase tae-MIR167b: 2e-39 PMRD tae-miR167: 1e-56 microPC miR167: 0.000001 | UniProt no hits RFAM MIR167_1: 3e-17 |
Identical with: tae-miR167 from PMRD (MNEST054678) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: cloned
references
[1] Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q, Genome Biol. 8:R96(2007)., "Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)"
