ABOUT THIS RECORDspecies: Triticum aestivum
miRNA family: MIR167_1
source: miRBase, original name: tae-MIR167b (MI0016456)
Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGCTGACAGCATGATCTA miRNA* GATCAAACAAGAAACGCTGCGGCAGCCTCACT mismatches: 5 bulges: 11 |
pre-miRNA
CTGCCCAAGGGAACGAGTGAAGCTGACAGCATGATCTATCTCCGAGTGATCAAACAAGAAACGCTGCGGCAGCCTCACTTCTTCCCGGCG
dot-bracket secondary structure
..(((...(((((.((((((.((((.((((.(((((...........)))))..........))))...)))).)))))).)))))))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
references
[1] Dryanova A, Zakharov A, Gulick PJ, Genome. 51:433-443(2008)., "Data mining for miRNAs and their targets in the Triticeae"
CTGCCCAAGGGAACGAGTGAAGCTGACAGCATGATCTATCTCCGAGTGATCAAACAAGAAACGCTGCGGCAGCCTCACTTCTTCCCGGCG
dot-bracket secondary structure
..(((...(((((.((((((.((((.((((.(((((...........)))))..........))))...)))).)))))).)))))))).
SIMILARITIES| miRBase tae-MIR167: 2e-39 PMRD tae-miR167: 2e-39 microPC no hits | UniProt no hits RFAM MIR167_1: 0.000000000001 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
references
[1] Dryanova A, Zakharov A, Gulick PJ, Genome. 51:433-443(2008)., "Data mining for miRNAs and their targets in the Triticeae"
