ABOUT THIS RECORDspecies: Triticum aestivum
miRNA family: MIR171
source: miRBase, original name: tae-MIR171a (MI0006175)
Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGATTGAGCCGTGCCAATATC miRNA* TGTTGGCTCGACTCACTCAGA mismatches: 3 bulges: 0 |
pre-miRNA
TGGAATGGTCACTATGATGTTGGCTCGACTCACTCAGACCACGCCTGCCGGCCGGCCGTAGCCATGCATCTGCATGCGGTGGTGGCTCTGATTGAGCCGT
GCCAATATCTCAGTGCTCTTTCATGCATGC
dot-bracket secondary structure
(((((.((.((((..(((((((((.((.((((.((((((((((((.(((....)))......(((((....))))).))).)))).))))).)))).)).
)))))))))..)))))).))))).......
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q, Genome Biol. 8:R96(2007)., "Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)"
TGGAATGGTCACTATGATGTTGGCTCGACTCACTCAGACCACGCCTGCCGGCCGGCCGTAGCCATGCATCTGCATGCGGTGGTGGCTCTGATTGAGCCGT
GCCAATATCTCAGTGCTCTTTCATGCATGC
dot-bracket secondary structure
(((((.((.((((..(((((((((.((.((((.((((((((((((.(((....)))......(((((....))))).))).)))).))))).)))).)).
)))))))))..)))))).))))).......
SIMILARITIES| miRBase hvu-MIR171: 0.000000000000002 PMRD tae-miR170b: 3e-48 microPC miR171: 3e-48 | UniProt no hits RFAM MIR171_1: 0.0000000005 |
Identical with: miR171 from microPC (MNEST045636) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q, Genome Biol. 8:R96(2007)., "Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)"
