ABOUT THIS RECORDspecies: Triticum aestivum
miRNA family: MIR171
source: miRBase, original name: tae-MIR171b (MI0016468)
Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGAGCCGTGCCAATATCACG miRNA* mismatches: 4 bulges: 0 |
pre-miRNA
TGAGTTAATCCTGCGAGGGGAGTGAACGCGGTATTGGTGCGGTTCAATCAGAGAGCTGGCGCCCCAGGAGGCAAGGGGTTCCTCCCTTCGATTGAGCCGT
GCCAATATCACGCGGTTTCTCATGAATCGCATCCTCCT
dot-bracket secondary structure
.................(((((.((....((((((((..((((((((((..((.(..((.(((((.........))))).))..)))..)))))))))).
.))))))))..(((((((.....))))))).)))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
references
[1] Dryanova A, Zakharov A, Gulick PJ, Genome. 51:433-443(2008)., "Data mining for miRNAs and their targets in the Triticeae"
TGAGTTAATCCTGCGAGGGGAGTGAACGCGGTATTGGTGCGGTTCAATCAGAGAGCTGGCGCCCCAGGAGGCAAGGGGTTCCTCCCTTCGATTGAGCCGT
GCCAATATCACGCGGTTTCTCATGAATCGCATCCTCCT
dot-bracket secondary structure
.................(((((.((....((((((((..((((((((((..((.(..((.(((((.........))))).))..)))..)))))))))).
.))))))))..(((((((.....))))))).)))))))
SIMILARITIES| miRBase bdi-MIR171c: 8e-21 PMRD tae-miR170a: 2e-40 microPC miR171: 0.000000000007 | UniProt no hits RFAM MIR171_1: 0.0000000001 |
Identical with: tae-miR171b from PMRD (MNEST054681) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
references
[1] Dryanova A, Zakharov A, Gulick PJ, Genome. 51:433-443(2008)., "Data mining for miRNAs and their targets in the Triticeae"
