ABOUT THIS RECORDspecies: Triticum aestivum
miRNA family: MIR319
source: miRBase, original name: tae-MIR319 (MI0016453)
Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGGACTGAAGGGAGCTCCCT miRNA* GGAGCTCACTTCAGTCCACTC mismatches: 2 bulges: 0 |
pre-miRNA
AGTTTGAGGGAGCTCACTTCAGTCCACTCATGGGAGGTAGCGGGGATTGAACGAGCTGCCGACTCATTCACTCGAGCACACAGTAGATATGAGACTAGTC
CAGGGCATACCAGTATGTTACAATATGTACTGTGCGAATGAGCGAATGCAGCGGGAGATTGTTCTCTCTTTCCTCCTCCATGCTTGGACTGAAGGGAGCT
CCCTCATCTCT
dot-bracket secondary structure
....(((((((((((.((((((((((..(((((.(((.((..((((..((((((.((.(((.(((((((.((((..(.(((((((.((((..((....))
...((((((....))))))...)))).))))))).)..)))).))))).))))).)).))))))..))))..))))))))))..)))))))))).)))))
)))))).....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
references
[1] Dryanova A, Zakharov A, Gulick PJ, Genome. 51:433-443(2008)., "Data mining for miRNAs and their targets in the Triticeae"
AGTTTGAGGGAGCTCACTTCAGTCCACTCATGGGAGGTAGCGGGGATTGAACGAGCTGCCGACTCATTCACTCGAGCACACAGTAGATATGAGACTAGTC
CAGGGCATACCAGTATGTTACAATATGTACTGTGCGAATGAGCGAATGCAGCGGGAGATTGTTCTCTCTTTCCTCCTCCATGCTTGGACTGAAGGGAGCT
CCCTCATCTCT
dot-bracket secondary structure
....(((((((((((.((((((((((..(((((.(((.((..((((..((((((.((.(((.(((((((.((((..(.(((((((.((((..((....))
...((((((....))))))...)))).))))))).)..)))).))))).))))).)).))))))..))))..))))))))))..)))))))))).)))))
)))))).....
SIMILARITIES| miRBase bdi-MIR319: 5e-48 PMRD tae-miR319a: 6e-109 microPC miR319: 0.0000007 | UniProt no hits RFAM MIR159: 0.00001 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
references
[1] Dryanova A, Zakharov A, Gulick PJ, Genome. 51:433-443(2008)., "Data mining for miRNAs and their targets in the Triticeae"
