ABOUT THIS RECORDspecies: Triticum aestivum
miRNA family: MIR399
source: miRBase, original name: tae-MIR399 (MI0006176)
Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCAAAGGAGAATTGCCC miRNA* GCGCTTCTCCCTTGGCACG mismatches: 2 bulges: 0 |
pre-miRNA
TCGTGTGTGAATCACAGGGCGCTTCTCCCTTGGCACGGTGGCATGCATGTACATATGATGGTGGTAGCCTGGTGAGCGTGCGGTGCAGCTTGCTAGCAAG
CCGTGCGTGCCAAAGGAGAATTGCCC
dot-bracket secondary structure
...((((.....))))(((((.((((((.((((((((...((((((((((.(((.....(((....)))..))).)))))).)))).(((((....))))
)....)))))))).)))))).)))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q, Genome Biol. 8:R96(2007)., "Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)"
TCGTGTGTGAATCACAGGGCGCTTCTCCCTTGGCACGGTGGCATGCATGTACATATGATGGTGGTAGCCTGGTGAGCGTGCGGTGCAGCTTGCTAGCAAG
CCGTGCGTGCCAAAGGAGAATTGCCC
dot-bracket secondary structure
...((((.....))))(((((.((((((.((((((((...((((((((((.(((.....(((....)))..))).)))))).)))).(((((....))))
)....)))))))).)))))).)))))
SIMILARITIES| miRBase osa-MIR399c: 0.0000001 PMRD tae-miR399: 2e-67 microPC miR399: 5e-59 | UniProt no hits RFAM mir-399: 0.000002 |
Identical with: miR399 from microPC (MNEST045456) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q, Genome Biol. 8:R96(2007)., "Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)"
