ABOUT THIS RECORDspecies: Triticum aestivum
miRNA family: MIR444
source: miRBase, original name: tae-MIR444b (MI0016467)
Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGCTGCCTCAAGCTTGCTGC miRNA* ACCGAGCATGAGGCAACAACT mismatches: 3 bulges: 0 |
pre-miRNA
GATATGCATGTGGCGGCACCGAGCATGAGGCAACAACTGCATTACTTGCGGGGAAGGCGCAAGTAGGACACCTGCATTACTTGCAAACAAGGCGCACCAT
ACTTGTGGCTTTCTTGCAAGTCGTGCAGTTGCTGCCTCAAGCTTGCTGCCTCCACATGTATA
dot-bracket secondary structure
..(((((((((((.((((.(((((.(((((((.(((((((((.(((((((((((((.((((((((((.(.((((((.....))).....))).)..)).)
))))))).))))))))))))).))))))))).))))))).))))).)))).)))))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dryanova A, Zakharov A, Gulick PJ, Genome. 51:433-443(2008)., "Data mining for miRNAs and their targets in the Triticeae"
GATATGCATGTGGCGGCACCGAGCATGAGGCAACAACTGCATTACTTGCGGGGAAGGCGCAAGTAGGACACCTGCATTACTTGCAAACAAGGCGCACCAT
ACTTGTGGCTTTCTTGCAAGTCGTGCAGTTGCTGCCTCAAGCTTGCTGCCTCCACATGTATA
dot-bracket secondary structure
..(((((((((((.((((.(((((.(((((((.(((((((((.(((((((((((((.((((((((((.(.((((((.....))).....))).)..)).)
))))))).))))))))))))).))))))))).))))))).))))).)))).)))))))))))
SIMILARITIES| miRBase tae-MIR444: 1e-57 PMRD tae-miR2024b: 2e-74 microPC miR444: 2e-46 | UniProt no hits RFAM MIR444: 2e-34 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dryanova A, Zakharov A, Gulick PJ, Genome. 51:433-443(2008)., "Data mining for miRNAs and their targets in the Triticeae"
