ABOUT THIS RECORDspecies: Triticum aestivum
source: miRBase, original name: tae-MIR1118 (MI0006180)
Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CACTACATTATGGAATGGAGGGA miRNA* TGGTCTTTCTGATTTTGTCTGTT mismatches: 6 bulges: 2 |
pre-miRNA
GAAGCACGTGGATAGAGGAAGCACTACATTATGGAATGGAGGGAGTATGTTGTAGGCAATGATTGTTTGCCTTGAAGATTTTATAGATCCTGCTCTGGTC
TTTCTGATTTTGTCTGTTCCTTTTTTTTATGTTTGGTTCG
dot-bracket secondary structure
(((.((((((((.(((((((.((..(((..((((((.((..((((((......((((((.......))))))....((((.....)))).))))))..))
.)))).))..))).)))))))))..)))))))..).))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern
references
[1] Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q, Genome Biol. 8:R96(2007)., "Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)"
GAAGCACGTGGATAGAGGAAGCACTACATTATGGAATGGAGGGAGTATGTTGTAGGCAATGATTGTTTGCCTTGAAGATTTTATAGATCCTGCTCTGGTC
TTTCTGATTTTGTCTGTTCCTTTTTTTTATGTTTGGTTCG
dot-bracket secondary structure
(((.((((((((.(((((((.((..(((..((((((.((..((((((......((((((.......))))))....((((.....)))).))))))..))
.)))).))..))).)))))))))..)))))))..).))).
SIMILARITIES| miRBase no hits PMRD tae-miR1118: 9e-64 microPC miR1118: 0.0000004 | UniProt no hits RFAM MIR1122: 0.0005 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern
references
[1] Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q, Genome Biol. 8:R96(2007)., "Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)"
