ABOUT THIS RECORDspecies: Triticum aestivum
miRNA family: MIR1120
source: miRBase, original name: tae-MIR1120 (MI0006182)
Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACATTCTTATATTATGAGACGGAG miRNA* CCGTCCCATAATATAAGAACATTT mismatches: 3 bulges: 0 |
pre-miRNA
GCGGCCGCCCGGGCAGGTACTCCCTCCGTCCCATAATATAAGAACATTTTTGACAGTGTAGTGTCAAAAACATTCTTATATTATGAGACGGAGGGAGTAT
TTCCCAGCTCCTGAATCAC
dot-bracket secondary structure
.(((..((..(((.((((((((((((((((.(((((((((((((..(((((((((......)))))))))..))))))))))))).))))))))))))))
))))).))..)))......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, RTPCR
references
[1] Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q, Genome Biol. 8:R96(2007)., "Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)"
GCGGCCGCCCGGGCAGGTACTCCCTCCGTCCCATAATATAAGAACATTTTTGACAGTGTAGTGTCAAAAACATTCTTATATTATGAGACGGAGGGAGTAT
TTCCCAGCTCCTGAATCAC
dot-bracket secondary structure
.(((..((..(((.((((((((((((((((.(((((((((((((..(((((((((......)))))))))..))))))))))))).))))))))))))))
))))).))..)))......
SIMILARITIES| miRBase hvu-MIR1120: 0.000000006 PMRD tae-miR1120: 3e-63 microPC miR1439: 7e-18 | UniProt no hits RFAM MIR1122: 8e-24 |
Identical with: tae-miR1120 from PMRD (MNEST054695) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, RTPCR
references
[1] Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q, Genome Biol. 8:R96(2007)., "Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)"
