ABOUT THIS RECORDspecies: Triticum aestivum
miRNA family: MIR1121
source: miRBase, original name: tae-MIR1121 (MI0006183)
Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGTAGTGATCTAAACGCTCTTA miRNA* AGAGTGTTTAGATCACTTAAGT mismatches: 4 bulges: 0 |
pre-miRNA
TATATATGTACTCCCTCTGTAAAGAAATATTAGAGTGTTTAGATCACTTAAGTAGTGATCTAAACGCTCTTATATTTCTTTACGGAGGGAGTACTGTA
dot-bracket secondary structure
..((((.(((((((((((((((((((((((.(((((((((((((((((.....))))))))))))))))).)))))))))))))))))))))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, RTPCR
references
[1] Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q, Genome Biol. 8:R96(2007)., "Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)"
TATATATGTACTCCCTCTGTAAAGAAATATTAGAGTGTTTAGATCACTTAAGTAGTGATCTAAACGCTCTTATATTTCTTTACGGAGGGAGTACTGTA
dot-bracket secondary structure
..((((.(((((((((((((((((((((((.(((((((((((((((((.....))))))))))))))))).)))))))))))))))))))))))))))
SIMILARITIES| miRBase no hits PMRD tae-miR1121: 8e-51 microPC miR1121: 0.00000002 | UniProt no hits RFAM MIR1122: 2e-27 |
Identical with: tae-miR1121 from PMRD (MNEST054696) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, RTPCR
references
[1] Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q, Genome Biol. 8:R96(2007)., "Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)"
