ABOUT THIS RECORDspecies: Triticum aestivum
source: miRBase, original name: tae-MIR1124 (MI0006186)
Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCAGGACGTGAAGAGCGAGTCC miRNA* GAGCTCGATCCTTCTCACATCCCGCCACGCCATTGTCGCGT mismatches: 4 bulges: 19 |
pre-miRNA
ATTACATGACTCAAAGGAACGGCCCTGGGAGCTCGATCCTTCTCACATCCCGCCACGCCATTGTCGCGTCCATCCCCACGACGCAGGACGTGAAGAGCGA
GTCCAAGGCCGGAAGCTAGACTCGGTACT
dot-bracket secondary structure
..(((.(((.((.......(((((.(((..(((((...((..((((.(((.((...)).......(((((.........))))).))).))))..)))))
))))).))))).......)).))))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, RTPCR
references
[1] Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q, Genome Biol. 8:R96(2007)., "Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)"
ATTACATGACTCAAAGGAACGGCCCTGGGAGCTCGATCCTTCTCACATCCCGCCACGCCATTGTCGCGTCCATCCCCACGACGCAGGACGTGAAGAGCGA
GTCCAAGGCCGGAAGCTAGACTCGGTACT
dot-bracket secondary structure
..(((.(((.((.......(((((.(((..(((((...((..((((.(((.((...)).......(((((.........))))).))).))))..)))))
))))).))))).......)).))))))..
SIMILARITIES| miRBase no hits PMRD tae-miR1124: 3e-69 microPC no hits | UniProt no hits RFAM no hits |
Identical with: tae-miR1124 from PMRD (MNEST054699) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, RTPCR
references
[1] Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q, Genome Biol. 8:R96(2007)., "Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)"
