ABOUT THIS RECORDspecies: Triticum aestivum
miRNA family: MIR1125
source: miRBase, original name: tae-MIR1125 (MI0006187)
Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AACCAACGAGACCAACTGCGGCGG miRNA* GCCACATTCGGTCTTGTTGGTTAA mismatches: 4 bulges: 0 |
pre-miRNA
TTTGGCCGTAAATTTAACCAACGAGACCAACTGCGGCGGGAACAAAAATTATATCGCTGAATTATATCAAAAATACGAATTCAGTAGCATAGGTTTTGCT
CCCGCCACATTCGGTCTTGTTGGTTAAATTTACCGGTCAAA
dot-bracket secondary structure
.(((((((((((((((((((((((((((...((.(((((((.(((((.((((.(..(((((((.(((.....)))..)))))))..).)))).))))).)
)))))).))...)))))))))))))))))))).))))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern
references
[1] Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q, Genome Biol. 8:R96(2007)., "Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)"
TTTGGCCGTAAATTTAACCAACGAGACCAACTGCGGCGGGAACAAAAATTATATCGCTGAATTATATCAAAAATACGAATTCAGTAGCATAGGTTTTGCT
CCCGCCACATTCGGTCTTGTTGGTTAAATTTACCGGTCAAA
dot-bracket secondary structure
.(((((((((((((((((((((((((((...((.(((((((.(((((.((((.(..(((((((.(((.....)))..)))))))..).)))).))))).)
)))))).))...)))))))))))))))))))).))))))).
SIMILARITIES| miRBase no hits PMRD tae-miR1125: 1e-69 microPC miR1125: 8e-58 | UniProt no hits RFAM no hits |
Identical with: miR1125 from microPC (MNEST046086) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern
references
[1] Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q, Genome Biol. 8:R96(2007)., "Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)"
