ABOUT THIS RECORDspecies: Triticum aestivum
miRNA family: MIR1122
source: miRBase, original name: tae-MIR1127 (MI0006189)
Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCTTCCGTTCGGAATTAC miRNA* AATTCCGAACGGAGGGAGT mismatches: 0 bulges: 0 |
pre-miRNA
ACATTAGATGTACTCAACTACTCCTTCCGTTCGGAATTACTCGTCCAAGAAATAAATGTATCTAAATGCATTTTAGTTGTAGATACATCCATTTTTATCA
TTTTTGTGACAAGTAATTCCGAACGGAGGGAGTATATTCTAATGTGGATC
dot-bracket secondary structure
((((((((.(((......(((((((((((((((((((((((.((((((((((((((((((((((...((......))..)))))))))......))))..
)))))).))).)))))))))))))))))))))))))))))))))).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q, Genome Biol. 8:R96(2007)., "Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)"
ACATTAGATGTACTCAACTACTCCTTCCGTTCGGAATTACTCGTCCAAGAAATAAATGTATCTAAATGCATTTTAGTTGTAGATACATCCATTTTTATCA
TTTTTGTGACAAGTAATTCCGAACGGAGGGAGTATATTCTAATGTGGATC
dot-bracket secondary structure
((((((((.(((......(((((((((((((((((((((((.((((((((((((((((((((((...((......))..)))))))))......))))..
)))))).))).)))))))))))))))))))))))))))))))))).....
SIMILARITIES| miRBase tae-MIR1135: 0.000000000000002 PMRD tae-miR1127: 1e-81 microPC miR1127: 9e-58 | UniProt no hits RFAM MIR1122: 1e-35 |
Identical with: tae-miR1127 from PMRD (MNEST054702) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q, Genome Biol. 8:R96(2007)., "Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)"
