ABOUT THIS RECORDspecies: Triticum aestivum
source: miRBase, original name: tae-MIR1129 (MI0006191)
Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAGCGAGCCAGCGGAGACCGGCAG miRNA* TCGTCGCTCCACCATGGAATCAGCTGCTGATATGCTCGAACACGACCTGCA mismatches: 2 bulges: 30 |
pre-miRNA
CGGCCGCCATTCAGCCAGAAGAAGCAGCGAGCCAGCGGAGACCGGCAGCCAACCAAGGGCGTCGTCGCTCCACCATGGAATCAGCTGCTGATATGCTCGA
ACACGACCTGCAAGCTTCATGTATCTGCAACACCCCTGCTCCTCATCCACGACCCAAGTGACCTGAAAGAGCAAGCTGCTGCAGAGGGCAATCCTCGATA
TCTAAGAAGACCTCGGGCTTATTAGGGGAAGAGAGCTCGTGCCAGATCCACTCCCAACTGCCTCCGTCCACCATGGACGA
dot-bracket secondary structure
.(((.(((.....(((.((((..(((((((((((((((.(((.(((.(((.......)))))))))..(((.....))).....))))))....))))).
.......))))...)))).....((((((.((.(..(((((.(((..(((.......)))...)))..))))).).)).)))))).)))......(((..
(((....)))..)))))).......((((.((..((....))....))...))))....)))..(((((.....))))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern
references
[1] Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q, Genome Biol. 8:R96(2007)., "Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)"
CGGCCGCCATTCAGCCAGAAGAAGCAGCGAGCCAGCGGAGACCGGCAGCCAACCAAGGGCGTCGTCGCTCCACCATGGAATCAGCTGCTGATATGCTCGA
ACACGACCTGCAAGCTTCATGTATCTGCAACACCCCTGCTCCTCATCCACGACCCAAGTGACCTGAAAGAGCAAGCTGCTGCAGAGGGCAATCCTCGATA
TCTAAGAAGACCTCGGGCTTATTAGGGGAAGAGAGCTCGTGCCAGATCCACTCCCAACTGCCTCCGTCCACCATGGACGA
dot-bracket secondary structure
.(((.(((.....(((.((((..(((((((((((((((.(((.(((.(((.......)))))))))..(((.....))).....))))))....))))).
.......))))...)))).....((((((.((.(..(((((.(((..(((.......)))...)))..))))).).)).)))))).)))......(((..
(((....)))..)))))).......((((.((..((....))....))...))))....)))..(((((.....))))).
SIMILARITIES| miRBase no hits PMRD tae-miR1129: 4e-157 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern
references
[1] Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q, Genome Biol. 8:R96(2007)., "Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)"
