ABOUT THIS RECORDspecies: Triticum aestivum
source: miRBase, original name: tae-MIR1130 (MI0006192)
Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCTCCGTCTCGTAATGTAAGACG miRNA* TCTTACATTATGGGACGGAGTGGT mismatches: 0 bulges: 1 |
pre-miRNA
AAATGTCTTATACTCCCTCCGTCTCGTAATGTAAGACGTTTTTATAAGCTATGTTAGTCTGTAAAAAAAAGTCTTTGCAAAAACGTCTTACATTATGGGA
CGGAGTGGTAGTATTTGCAACG
dot-bracket secondary structure
...(((...((((((((((((((((((((((((((((((((((....((......((.((.........)).))..))))))))))))))))))))))))
))))).)).)))))..)))...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern
references
[1] Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q, Genome Biol. 8:R96(2007)., "Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)"
AAATGTCTTATACTCCCTCCGTCTCGTAATGTAAGACGTTTTTATAAGCTATGTTAGTCTGTAAAAAAAAGTCTTTGCAAAAACGTCTTACATTATGGGA
CGGAGTGGTAGTATTTGCAACG
dot-bracket secondary structure
...(((...((((((((((((((((((((((((((((((((((....((......((.((.........)).))..))))))))))))))))))))))))
))))).)).)))))..)))...
SIMILARITIES| miRBase no hits PMRD tae-miR1130: 1e-50 microPC miR1436: 0.00000002 | UniProt no hits RFAM MIR1122: 0.0000004 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern
references
[1] Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q, Genome Biol. 8:R96(2007)., "Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)"
