ABOUT THIS RECORDspecies: Triticum aestivum
miRNA family: MIRf341
source: miRBase, original name: tae-MIR1133 (MI0006195)
Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CATATACTCCCTCCGTCCGAAA miRNA* TCGGATGGAGGGAGTAGTAATT mismatches: 4 bulges: 0 |
pre-miRNA
ACTTCTTAGTGATAGTGGTCAATTACATCATATACTCCCTCCGTCCGAAAAAGTTTGTCCCAAGCTTGTTCCTCAAATGGATGTATCTAGCACTAACTTG
ATGCTACATACATTCATTTGAGGGACACGCTTTTTCGGATGGAGGGAGTAGTAATTTTGATATACACACTGAAGTTGCTA
dot-bracket secondary structure
(((((...(((.((...(((((((((......((((((((((((((((((((((.((((((...........((((((((((((((.((((((......)
.))))).)))))))))))))))))))).)))))))))))))))))))))))))))..)))).)))))...))))).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q, Genome Biol. 8:R96(2007)., "Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)"
ACTTCTTAGTGATAGTGGTCAATTACATCATATACTCCCTCCGTCCGAAAAAGTTTGTCCCAAGCTTGTTCCTCAAATGGATGTATCTAGCACTAACTTG
ATGCTACATACATTCATTTGAGGGACACGCTTTTTCGGATGGAGGGAGTAGTAATTTTGATATACACACTGAAGTTGCTA
dot-bracket secondary structure
(((((...(((.((...(((((((((......((((((((((((((((((((((.((((((...........((((((((((((((.((((((......)
.))))).)))))))))))))))))))).)))))))))))))))))))))))))))..)))).)))))...))))).....
SIMILARITIES| miRBase no hits PMRD tae-miR1133: 2e-99 microPC miR1133: 0.000009 | UniProt no hits RFAM MIR1122: 6e-35 |
Identical with: tae-miR1133 from PMRD (MNEST054708) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q, Genome Biol. 8:R96(2007)., "Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)"
