ABOUT THIS RECORDspecies: Triticum aestivum
source: miRBase, original name: tae-MIR1134 (MI0006196)
Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAACAACAACAAGAAGAAGAAGAT miRNA* CTTCTTCTTCTTGTTGTTGTTGTT mismatches: 1 bulges: 0 |
pre-miRNA
CCACGCGTCCGGCATTCTTCTTCTTCTTGTTGTTGTTGTTGTAATGGATTTGGAGGAGGAGGAGGAGGAGGAGCTGCTGTTGATGCTCCTAGTACAACAA
ATAAGGAGGCGGCGGAGGAGGAGCAACAACAACAAGAAGAAGAAGATTTGGGCTTGAAGCTGCAGCTGCAACAACATGTA
dot-bracket secondary structure
......((((((...(((((((((((((((((((((((((.(......(((......))).............(((((((.....(((((.((.......
)).))))))))))))....).))))))))))))))))))))))))).)))))).((.(((....))).))..........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q, Genome Biol. 8:R96(2007)., "Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)"
CCACGCGTCCGGCATTCTTCTTCTTCTTGTTGTTGTTGTTGTAATGGATTTGGAGGAGGAGGAGGAGGAGGAGCTGCTGTTGATGCTCCTAGTACAACAA
ATAAGGAGGCGGCGGAGGAGGAGCAACAACAACAAGAAGAAGAAGATTTGGGCTTGAAGCTGCAGCTGCAACAACATGTA
dot-bracket secondary structure
......((((((...(((((((((((((((((((((((((.(......(((......))).............(((((((.....(((((.((.......
)).))))))))))))....).))))))))))))))))))))))))).)))))).((.(((....))).))..........
SIMILARITIES| miRBase far-MIR1134: 0.0001 PMRD tae-miR1134: 5e-60 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q, Genome Biol. 8:R96(2007)., "Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)"
