ABOUT THIS RECORDspecies: Triticum aestivum
miRNA family: MIR1122
source: miRBase, original name: tae-MIR1135 (MI0006197)
Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTGCGACAAGTAATTCCGAACGGA miRNA* CATTCGGAATTACTTGTCTCGGAT mismatches: 2 bulges: 0 |
pre-miRNA
CTACTCCCTCCATTCGGAATTACTTGTCTCGGATATGGATGTATCTAGAACTAAAATACGTCTAGATACATCTATTTCTGCGACAAGTAATTCCGAACGG
AGGGAGTAG
dot-bracket secondary structure
(((((((((((.((((((((((((((((.((((.(((((((((((((((.(........)))))))))))))))).)))).)))))))))))))))).))
)))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q, Genome Biol. 8:R96(2007)., "Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)"
CTACTCCCTCCATTCGGAATTACTTGTCTCGGATATGGATGTATCTAGAACTAAAATACGTCTAGATACATCTATTTCTGCGACAAGTAATTCCGAACGG
AGGGAGTAG
dot-bracket secondary structure
(((((((((((.((((((((((((((((.((((.(((((((((((((((.(........)))))))))))))))).)))).)))))))))))))))).))
)))))))))
SIMILARITIES| miRBase tae-MIR1136: 1e-22 PMRD tae-miR1135: 3e-57 microPC miR1135: 3e-38 | UniProt no hits RFAM MIR1122: 2e-43 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q, Genome Biol. 8:R96(2007)., "Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)"
