ABOUT THIS RECORDspecies: Triticum aestivum
miRNA family: MIR1139
source: miRBase, original name: tae-MIR1139 (MI0006201)
Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGAGTAACATACACTAGTAACA miRNA* TTACTATTGAAGTTACTCCCA mismatches: 4 bulges: 1 |
pre-miRNA
GCCACAGTGGAGAGTAACATACACTAGTAACATACACATATCCCTAGAACTATATAACTACCTTCATAGKGGTAGCAACATAAGTGTGGTATCATGCAAA
GCTTCATTTATTAGGTTATAGACTCATATTGCATTGGGACATGTGATGTTATAGTAACTAGCTAAGTTACTCAAACTACCTCTCTCCTCGATGTTACTAT
TGAAGTTACTCCCACT
dot-bracket secondary structure
.....(((((.(((((((...((.(((((((((.(((((.((((....(((((((..(((((........)))))........)))))))...((((((.
......(((((......)))))......)))))).)))).)))))..(((..(((((((.....)))))))..)))..............))))))))).
))..))))))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
additional data
download this record
evidence: cloned
references
[1] Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q, Genome Biol. 8:R96(2007)., "Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)"
GCCACAGTGGAGAGTAACATACACTAGTAACATACACATATCCCTAGAACTATATAACTACCTTCATAGKGGTAGCAACATAAGTGTGGTATCATGCAAA
GCTTCATTTATTAGGTTATAGACTCATATTGCATTGGGACATGTGATGTTATAGTAACTAGCTAAGTTACTCAAACTACCTCTCTCCTCGATGTTACTAT
TGAAGTTACTCCCACT
dot-bracket secondary structure
.....(((((.(((((((...((.(((((((((.(((((.((((....(((((((..(((((........)))))........)))))))...((((((.
......(((((......)))))......)))))).)))).)))))..(((..(((((((.....)))))))..)))..............))))))))).
))..))))))))))))
SIMILARITIES| miRBase bdi-MIR1139: 0.00000004 PMRD tae-miR1139: 5e-120 microPC no hits | UniProt no hits RFAM no hits |
Identical with: tae-miR1139 from PMRD (MNEST054714) |
MOREmiRNEST target predictions
non-miRNEST targets: none
additional data
download this record
evidence: cloned
references
[1] Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q, Genome Biol. 8:R96(2007)., "Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)"
