ABOUT THIS RECORDspecies: Triticum aestivum
miRNA family: MIR169_1
source: miRBase, original name: tae-MIR1433 (MI0016460)
Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGGCAAGTCACCCTGGGCTACC miRNA* TAGCCAAGGATGATTTGCCTGT mismatches: 4 bulges: 0 |
pre-miRNA
TGGGGGTAAGAGGCCATCTTCGATAGCCAAGGATGATTTGCCTGTGAAACTCCCTTGGCAGCCGAGCTCTCTGCCACAGAGAGCGGCGTCCGGCGGTTCC
ATGGGCAAGTCACCCTGGGCTACCCGAAGTACCTCTTACCACACCCCAT
dot-bracket secondary structure
(((((((((((((....(((((.(((((.(((.(((((((((((((.((((.((..(((.(((..((((((((...)))))))))))))).)).)))).)
)))))))))))).))).)))))..)))))..))))))))....))))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dryanova A, Zakharov A, Gulick PJ, Genome. 51:433-443(2008)., "Data mining for miRNAs and their targets in the Triticeae"
TGGGGGTAAGAGGCCATCTTCGATAGCCAAGGATGATTTGCCTGTGAAACTCCCTTGGCAGCCGAGCTCTCTGCCACAGAGAGCGGCGTCCGGCGGTTCC
ATGGGCAAGTCACCCTGGGCTACCCGAAGTACCTCTTACCACACCCCAT
dot-bracket secondary structure
(((((((((((((....(((((.(((((.(((.(((((((((((((.((((.((..(((.(((..((((((((...)))))))))))))).)).)))).)
)))))))))))).))).)))))..)))))..))))))))....))))).
SIMILARITIES| miRBase osa-MIR1433: 0.0000000000005 PMRD osa-miR1433: 0.0000000000005 microPC miR169: 3e-51 | UniProt no hits RFAM MIR169_5: 0.00000000000001 |
Identical with: miR169 from microPC (MNEST045349) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dryanova A, Zakharov A, Gulick PJ, Genome. 51:433-443(2008)., "Data mining for miRNAs and their targets in the Triticeae"
