ABOUT THIS RECORDspecies: Triticum aestivum
source: miRBase, original name: tae-MIR5086 (MI0017949)
Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACATTGGTGGAAGGCGTGGTA miRNA* CACGACTTCCACCAATGTGA mismatches: 1 bulges: 1 |
pre-miRNA
ACACAAAATCACATTGGTGGAAGGCGTGGTAAAGAAACAAAATCGATGCTTCGAAAATGTTACTTACAAAAGCATTTTGGAGTTTCGATTTTTTTTTGCA
CGACTTCCACCAATGTGATTTCGCGC
dot-bracket secondary structure
.(.(.((((((((((((((((((.((((.((((((((...((((((.(((((.((((((((.........))))))))))))).))))))))))))))))
)).)))))))))))))))))).).).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U, BMC Genomics. 12:129(2011)., "Discovery of barley miRNAs through deep sequencing of short reads_field"
ACACAAAATCACATTGGTGGAAGGCGTGGTAAAGAAACAAAATCGATGCTTCGAAAATGTTACTTACAAAAGCATTTTGGAGTTTCGATTTTTTTTTGCA
CGACTTCCACCAATGTGATTTCGCGC
dot-bracket secondary structure
.(.(.((((((((((((((((((.((((.((((((((...((((((.(((((.((((((((.........))))))))))))).))))))))))))))))
)).)))))))))))))))))).).).
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U, BMC Genomics. 12:129(2011)., "Discovery of barley miRNAs through deep sequencing of short reads_field"
