ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIR156
source: miRBase, original name: zma-MIR156b (MI0001459)
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAGAAGAGAGTGAGCAC miRNA* GCTCACCCTCTATCTGTCAGT mismatches: 1 bulges: 1 |
pre-miRNA
AGATGAGTTTTTTGAAGGTTTGACAGAAGAGAGTGAGCACACACGGTGGTTTCTTACCATGAGTGTCATGCTAGGAGCTGTGCGTGCTCACCCTCTATCT
GTCAGTCACTCATCAAGCCCATCT
dot-bracket secondary structure
(((((.((((..(((..(.((((((((((((.((((((((.((((((....(((((.((((.....)))).))))))))))).)))))))).)))).)))
))))).)..)))..)))).)))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Maher C, Timmermans M, Stein L, Ware D, Proc IEEE CSB :718-723(2004)., "Identifying microRNAs in plant genomes"
[2] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"
[3] Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA, Cell Res. 15:336-360(2005)., "Identification and characterization of new plant microRNAs using EST analysis"
AGATGAGTTTTTTGAAGGTTTGACAGAAGAGAGTGAGCACACACGGTGGTTTCTTACCATGAGTGTCATGCTAGGAGCTGTGCGTGCTCACCCTCTATCT
GTCAGTCACTCATCAAGCCCATCT
dot-bracket secondary structure
(((((.((((..(((..(.((((((((((((.((((((((.((((((....(((((.((((.....)))).))))))))))).)))))))).)))).)))
))))).)..)))..)))).)))))
SIMILARITIES| miRBase ssp-MIR156: 1e-47 PMRD zma-miR156b: 3e-66 microPC miR156: 5e-34 | UniProt no hits RFAM mir-156: 2e-30 |
Identical with: zma-miR156b from PMRD (MNEST054912) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Maher C, Timmermans M, Stein L, Ware D, Proc IEEE CSB :718-723(2004)., "Identifying microRNAs in plant genomes"
[2] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"
[3] Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA, Cell Res. 15:336-360(2005)., "Identification and characterization of new plant microRNAs using EST analysis"
