ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIR156
source: miRBase, original name: zma-MIR156c (MI0001460)
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAGAAGAGAGTGAGCAC miRNA* GCTCACTTCTCTCTTTGTCAGC mismatches: 0 bulges: 2 |
pre-miRNA
GGTGGAGGAGAGGTGAAAGCTGACAGAAGAGAGTGAGCACACATGGTGCCTTTCTTGCATGATGTATGATCGAGAGAGTTCATGCTCGAAGCTATGCGTG
CTCACTTCTCTCTTTGTCAGCCATTAGAACTCCTCTATC
dot-bracket secondary structure
((((((((((...(((..((((((((((((((((((((((.((((((....(((..((((((.......((....))..))))))..))))))))).)))
))))).))))).)))))))))..)))...))))))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Maher C, Timmermans M, Stein L, Ware D, Proc IEEE CSB :718-723(2004)., "Identifying microRNAs in plant genomes"
[2] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"
[3] Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA, Cell Res. 15:336-360(2005)., "Identification and characterization of new plant microRNAs using EST analysis"
GGTGGAGGAGAGGTGAAAGCTGACAGAAGAGAGTGAGCACACATGGTGCCTTTCTTGCATGATGTATGATCGAGAGAGTTCATGCTCGAAGCTATGCGTG
CTCACTTCTCTCTTTGTCAGCCATTAGAACTCCTCTATC
dot-bracket secondary structure
((((((((((...(((..((((((((((((((((((((((.((((((....(((..((((((.......((....))..))))))..))))))))).)))
))))).))))).)))))))))..)))...))))))))))
SIMILARITIES| miRBase sof-MIR156: 2e-49 PMRD zma-miR156c: 4e-75 microPC miR156: 7e-49 | UniProt no hits RFAM mir-156: 3e-24 |
Identical with: zma-miR156c from PMRD (MNEST054913) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Maher C, Timmermans M, Stein L, Ware D, Proc IEEE CSB :718-723(2004)., "Identifying microRNAs in plant genomes"
[2] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"
[3] Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA, Cell Res. 15:336-360(2005)., "Identification and characterization of new plant microRNAs using EST analysis"
