ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIR156
source: miRBase, original name: zma-MIR156d (MI0001456)
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAGAAGAGAGTGAGCAC miRNA* GCTCACTTCTCTTTCTGTCAGC mismatches: 0 bulges: 2 |
pre-miRNA
AGGCTCTCGAGAGATTGACAGAAGAGAGTGAGCACACGGCGCGACGAACGACATAGCATGTATGCCGTCCTCGCCGCGTGCTCACTTCTCTTTCTGTCAG
CCTCTTTCTCTCGATGGCT
dot-bracket secondary structure
.((((.(((((((((((((((((((((((((((((.(((((.((((....((((...))))....))))..))))).)))))))).)))).)))))))))
......)))))))).))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Maher C, Timmermans M, Stein L, Ware D, Proc IEEE CSB :718-723(2004)., "Identifying microRNAs in plant genomes"
[2] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"
AGGCTCTCGAGAGATTGACAGAAGAGAGTGAGCACACGGCGCGACGAACGACATAGCATGTATGCCGTCCTCGCCGCGTGCTCACTTCTCTTTCTGTCAG
CCTCTTTCTCTCGATGGCT
dot-bracket secondary structure
.((((.(((((((((((((((((((((((((((((.(((((.((((....((((...))))....))))..))))).)))))))).)))).)))))))))
......)))))))).))))
SIMILARITIES| miRBase sbi-MIR156a: 8e-33 PMRD zma-miR156d: 3e-63 microPC miR156: 2e-42 | UniProt no hits RFAM mir-156: 9e-33 |
Identical with: miR156 from microPC (MNEST045823) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Maher C, Timmermans M, Stein L, Ware D, Proc IEEE CSB :718-723(2004)., "Identifying microRNAs in plant genomes"
[2] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"
