ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIR156
source: miRBase, original name: zma-MIR156j (MI0001808)
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAGAAGAGAGAGAGCACA miRNA* TGCTCTCTGCTCTCACTGTCATC mismatches: 1 bulges: 2 |
pre-miRNA
CGAGTGGACCTCGGGAGCGATGACAGAAGAGAGAGAGCACAACCCAGCACCAGCGAGGAAAAGCCTCGCTTCTGCGAGGGCCGTGTGCTCTCTGCTCTCA
CTGTCATCGCCCACAGGCCACCGAA
dot-bracket secondary structure
((.((((.(((..((.((((((((((.((((((((((((((.(((.(((..(((((((.....)))))))..)))..)))...)))))))))).))))..
))))))))))))..)))))))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"
[2] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
CGAGTGGACCTCGGGAGCGATGACAGAAGAGAGAGAGCACAACCCAGCACCAGCGAGGAAAAGCCTCGCTTCTGCGAGGGCCGTGTGCTCTCTGCTCTCA
CTGTCATCGCCCACAGGCCACCGAA
dot-bracket secondary structure
((.((((.(((..((.((((((((((.((((((((((((((.(((.(((..(((((((.....)))))))..)))..)))...)))))))))).))))..
))))))))))))..)))))))))..
SIMILARITIES| miRBase sbi-MIR156d: 2e-49 PMRD zma-miR156j: 8e-67 microPC miR157: 0.0000004 | UniProt no hits RFAM mir-156: 4e-41 |
Identical with: zma-miR156j from PMRD (MNEST054920) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"
[2] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
