ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIR166
source: miRBase, original name: zma-MIR166n (MI0013197)
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCAATCCCT miRNA* GGATTGTTGTCTGGCTCGGTG mismatches: 6 bulges: 0 |
pre-miRNA
GGGATTGTTGTCTGGCTCGGTGTCTCCGGTCGAGAYGGCCTTGCCGGCGCCGGAGCTGTCGTCGACCGGAGATCTCGGACCAGGCTTCAATCCCTT
dot-bracket secondary structure
(((((((..((((((..((..((((((((((((((.(((....(((....))).))).)).))))))))))))..))..))))))..)))))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
additional data
download this record
evidence: Solexa
references
[1] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"
GGGATTGTTGTCTGGCTCGGTGTCTCCGGTCGAGAYGGCCTTGCCGGCGCCGGAGCTGTCGTCGACCGGAGATCTCGGACCAGGCTTCAATCCCTT
dot-bracket secondary structure
(((((((..((((((..((..((((((((((((((.(((....(((....))).))).)).))))))))))))..))..))))))..)))))))..
SIMILARITIES| miRBase sbi-MIR166g: 3e-21 PMRD sbi-miR166g: 3e-21 microPC miR166: 0.0000002 | UniProt no hits RFAM mir-166: 1e-47 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
additional data
download this record
evidence: Solexa
references
[1] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"
