ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIR169
source: miRBase, original name: zma-MIR169q (MI0013204)
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGCCAAGAATGGCTTGCCTA miRNA* GCAGGCCTTCTGGCTAAG mismatches: 1 bulges: 2 |
pre-miRNA
TTAGCCAAGAATGGCTTGCCTATCTCCATTATTTGGTCCATCTTCTTGGGAGACCTCCCTCATGGTGTGGATGGAATGTGGATGGTGGCAGGCCTTCTGG
CTAAGT
dot-bracket secondary structure
(((((((.(((.((((((((.((((((((.((((.((((((((....((((....))))....)).)))))).))))))))).)))))))))))))))))
))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"
TTAGCCAAGAATGGCTTGCCTATCTCCATTATTTGGTCCATCTTCTTGGGAGACCTCCCTCATGGTGTGGATGGAATGTGGATGGTGGCAGGCCTTCTGG
CTAAGT
dot-bracket secondary structure
(((((((.(((.((((((((.((((((((.((((.((((((((....((((....))))....)).)))))).))))))))).)))))))))))))))))
))))..
SIMILARITIES| miRBase sbi-MIR169p: 0.000000000000006 PMRD osa-miR1430: 0.000000000001 microPC miR1430: 0.000000000001 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"
