ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIR396
source: miRBase, original name: zma-MIR396b (MI0001800)
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCCACAGCTTTCTTGAACTG miRNA* GTTCAATAAAGCTGTGGGAAA mismatches: 1 bulges: 0 |
pre-miRNA
AGATGGCCTTCTTTGTGATCTTCCACAGCTTTCTTGAACTGCATCTCTCAGAGGAGCGGCAGCTTCAACTCCTCCACCCGCATCAGCAGGTGCATGCAGT
TCAATAAAGCTGTGGGAAACTGCAGAGAGAGGCCAG
dot-bracket secondary structure
...(((((((((((((..(.((((((((((((.(((((((((((......((((((..(......)..))))))((((.((....)).)))).)))))))
)))).)))))))))))).)..))))))).)))))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"
[2] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
AGATGGCCTTCTTTGTGATCTTCCACAGCTTTCTTGAACTGCATCTCTCAGAGGAGCGGCAGCTTCAACTCCTCCACCCGCATCAGCAGGTGCATGCAGT
TCAATAAAGCTGTGGGAAACTGCAGAGAGAGGCCAG
dot-bracket secondary structure
...(((((((((((((..(.((((((((((((.(((((((((((......((((((..(......)..))))))((((.((....)).)))).)))))))
)))).)))))))))))).)..))))))).)))))).
SIMILARITIES| miRBase zma-MIR396h: 1e-62 PMRD zma-miR396b: 2e-73 microPC miR396: 0.000000000007 | UniProt no hits RFAM MIR396: 4e-26 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"
[2] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
