ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIR396
source: miRBase, original name: zma-MIR396c (MI0010569)
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCCACAGGCTTTCTTGAACTG miRNA* GGTGGTGGTGGTATGTCGGATGG mismatches: 10 bulges: 1 |
pre-miRNA
CGGGCATGCTTTCCACAGGCTTTCTTGAACTGTGAACTCGTGGGTGGTGGTGGTATGTCGGATGGAATGCTTGG
dot-bracket secondary structure
(((((((.((.((((((.(((.((.....(..((....))..).....)).))).))).))).)).))))))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"
[2] Xue LJ, Zhang JJ, Xue HW, Nucleic Acids Res. 37:916-930(2009)., "Characterization and expression profiles of miRNAs in rice seeds"
CGGGCATGCTTTCCACAGGCTTTCTTGAACTGTGAACTCGTGGGTGGTGGTGGTATGTCGGATGGAATGCTTGG
dot-bracket secondary structure
(((((((.((.((((((.(((.((.....(..((....))..).....)).))).))).))).)).))))))).
SIMILARITIES| miRBase zma-MIR396d: 2e-19 PMRD zma-miR396n: 3e-31 microPC miR396: 0.00000000006 | UniProt no hits RFAM MIR396: 2e-17 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"
[2] Xue LJ, Zhang JJ, Xue HW, Nucleic Acids Res. 37:916-930(2009)., "Characterization and expression profiles of miRNAs in rice seeds"
